ACADEMIC BACKGROUND

Amazon Rainforest, Brazil.
Amazon Rainforest, Brazil.
2024
2024
Running a half marathon (21km) - 9 October (2022)
Running a half marathon (21km) - 9 October (2022)
Home office during the Covid-19 pandemic
Home office during the Covid-19 pandemic
Spreading the word on Bioinformatics (Teaching)
Spreading the word on Bioinformatics (Teaching)


Leandro Nascimento Lemos, PhD

Professor of Molecular Ecology and Bioinformatics


1. Academic Background

  • Assistant Professor (September/2023- Current) - Ilum/CNPEM (Brazilian Center for Research in Energy and Materials): Molecular Biology, Data Science, Bioinformatics, Biomathematics & Environmental Sciences.
  • Postdoctoral Researcher in Microbial Ecology (April/2022 - August/2023) - FAPESP/UNICAMP
  • Postdoctoral Researcher in Bioinformatics (Mar/2020 - Fev/2022) - FUSP/LNCC
  • Postdoctoral Researcher in Bioinformatics (Oct/2019 - Fev/2020) - ERC/University of Vienna
  • Ph.D. in Bioinformatics/Microbial Ecology (Out/2015 - Sep/2019 ) - FAPESP/USP
  • Visiting PhD student (April/2018 - March/2019 ) - FAPESP/University of Vienna (Austria)
  • Visiting Scholar (Aug/2017-Set/2017) - FAPESP/Ku Leuven (Belgium)

  • Master Science in Bioinformatics (2013 - 2015) - FAPESP/USP

  • BSc. In Life Sciences (2008 - 2012) - CNPq/Universidade Federal do Pampa

2. Professional certification

2.1. Microbial Genomics & Metagenomics Workshop (Joint Genome Institute);

2.2. Virus Research and Surveillance: Bioinformatics, Genetics and Public Health (Federal University of Rio de Janeiro);

2.3. EMBO Practical Course - Tree building: Advanced concepts and practice of phylogenetic analysis (European Molecular Biology Organization/Portugal);

2.4. Fungal Genomics (Joint Genome Institute/USA); Gone fishin, a Genome-Resolved Metagenomics Workshop (University of Chicago/USA and Friedrich-Schiller-Universität Jena/Germany);

2.5. Ecological Network Inference and Analysis (KU Leuven/Belgium);

2.6. Bioinformatics for RNA-Seq Analysis (National Laboratory of Scientific Computing/Brazil);

3. Ad-hoc journal Reviewer

PeerJ; FEMS Microbiology Ecology; Parasitology; Frontiers in Environmental Science; BMC Microbiology; PLoS One; Scientific Reports; Genomics; Biochimie; Brazilian Journal of Microbiology; Microbial Ecology; Computational and Structural Biotechnology Journal; Genetics and Molecular Biology; Disease Markers; Geoderma; All Life; Microbes, Infection and Chemotherapy; BMC Microbiology; Current Genomics; Frontiers in Veterinary Science; Frontiers in Cellular and Infection Microbiology; Bioinformatics; Environmental Microbiology; Microbiome; Frontiers in Soil Science; NAR Genomics and Bioinformatics; Science of the Total Environment; ISME Journal; Molecular Ecology Resources; Communications Biology; Molecular Genetics and Genomics; ; Environmental Monitoring and Assessment; Discover Applied Sciences; Journal of Medical Internet Research; npj Biofilms and Microbiomes; Data in Brief; BMC Genomic Data; iMeta; Total Environment Microbiology; Journal of the Saudi Society of Agricultural Sciences; Marine Life Science & Technology

4. Computer Skills

Linux: Advanced | Shell: Intermediate | Perl: Intermediate | R: Advanced | Python: Advanced | LaTeX: Intermediate | MySQL: Basic | Machine Learning: Intermediate | Deep Learning: Intermediate | Nextflow: Basic | HPC: Intermediate

● Software development:

1. Sabia App 2.0 (https://app.sabia.lncc.br) [Collaborator]

2. PGPg_finder: https://github.com/tpellegrinetti/PGPg_finder [Collaborator]

5. Teaching Experience

    ● Assistant Professor (September/2023- Current) - Ilum/CNPEM (Brazilian Center for Research in Energy and Materials): Molecular Biology, Data Science, Biomathematics & Environmental Sciences

    ● Invited Teacher (Aug/2020 - Aug/2020) - Bioinformatics, Genomics, and microbial ecology - Federal University of Mato Grosso do Sul (UFMS/Brazil): Postgraduate Program in Agronomy

    ● Invited Teacher (Dec/2017 - Dec/2017) - Bioinformatics course for Next-generation sequencing data in Microbial Ecology - Federal University of Sao Carlos (UFScar/Brazil): Postgraduate Program in Biotechnology

    ● Invited Teacher (Aug/2017 - Aug/2017) - Bioinformatics course for Next-generation sequencing data in Microbial Ecology - Federal University of Viçosa (UFV/Brazil): Postgraduate Program in Microbiology

    ● Invited Teacher (2015 - 2017) - Bioinformatics, Genomics, and microbial ecology - University of Sao Paulo (USP/Brazil): Bachelor in Agronomy and Bachelor in Life Sciences.

    6.Hobbies


    Runner / Board Games / Trekking / Video Games / Paint miniatures